Fernando Perez-Cruz

Fernando Perez-Cruz

Former Deputy Executive Director & Chief Data Scientist
Academia
Leadership & Administration
(Alumni)

Fernando Perez-Cruz received a PhD. in Electrical Engineering from the Technical University of Madrid. He is Titular Professor in the Computer Science Department at ETH Zurich and Head of Machine Learning Research and AI at Spiden. He has been a member of the technical staff at Bell Labs and a Machine Learning Research Scientist at Amazon. Fernando has been a visiting professor at Princeton University under a Marie Curie Fellowship and an associate professor at University Carlos III in Madrid. He held positions at the Gatsby Unit (London), Max Planck Institute for Biological Cybernetics (Tuebingen), and BioWulf Technologies (New York). Fernando Perez-Cruz has served as Chief Data Scientist at the SDSC from 2018 to 2023, and Deputy Executive Director of the SDSC from 2022 to 2023

Projects

IRMA

In Progress
Interpretable and Robust Machine Learning for Mobility Analysis
Engineering

FLBI

In Progress
Feature Learning for Bayesian Inference

LEAP

Completed
LEArning to Print – towards data-driven real-time predictions for additive manufacturing
Engineering

DUPLET

In Progress
DUal Positron Lifetime Emission Tomography
Biomedical Data Science

DAAAD_Bridges

Completed
Domain-aware-AI Augmented Design of Bridge Structures
Engineering

SEMIRAMIS

Completed
AI-augmented Architectural Design
Engineering

MLTox

Completed
Enhancing toxicological testing through machine learning
Energy, Climate & Environment

SMARTAIR

Completed
Self-guided Machine Learning Algorithms for Real-Time Assimilation, Interpolation and Rendering of Flow Data
Engineering

PolyNet

Completed
Exploring disease trajectories and outcome prediction using novel methods in network analysis and machine learning
Biomedical Data Science

NLP

Completed
Narratives in Law and Politics: A Computational Linguistics Approach
Digital Administration

4Real

Real-time urban pluvial flood forecasting
Energy, Climate & Environment

DEAPSnow

Completed
Improving snow avalanche forecasting by data-driven automated predictions
Energy, Climate & Environment

PACMAN HIPA

Completed
Particle Accelerators and Machine Learning
Big Science Data

MSEI

Completed
Molecular structure elucidation by integrating different data mining strategies
Chemistry

EconMultiplex

Completed
Multiplex Networks in International Trade
Digital Administration

DATALAKES

Completed
Heterogeneous data platform for operational modelling and forecasting of Swiss lakes
Energy, Climate & Environment

DemocraSci

Completed
A research platform for Data-Driven Democracy Studies in Switzerland
Digital Administration

Citizen-Controlled

Completed
Citizen-controlled Data Science for Multiple Sclerosis Research
Biomedical Data Science

BISTOM

Completed
Bayesian Parameter Inference for Stochastic Models
Physics

AADS

Completed
Data Science Enabled Acoustic Design
Engineering

SPEEDMIND

Completed
Improving species biodiversity analyses and citizen science feedback through machine learning
Energy, Climate & Environment

Publications

Wang, R.; Xin, Y.; Zhang, Y.; Perez-Cruz, F.; Raubal, M. "Counterfactual Explanations for Deep Learning-Based Traffic Forecasting" Preprint 2024 View publication
Humml, J. M.; Cohen, V.; Perez-Cruz, F.; Gharib, M.; Rösgen, T. "Augmented Reality Guided Aerodynamic Sampling" AIAA SCITECH 2024 Forum 2024 View publication
Bertoli, G.; Mohebi, S.; Ozdemir, F.; Jucker, J.; Rüdisühli, S.; Perez-Cruz, F.; Schemm, S. "Revisiting Machine Learning Approaches for Short- and Longwave Radiation Inference in Weather and Climate Models, Part II: Online Performance" Preprint 2024 View publication
Dirmeier, S.; Hong, Y.; Perez-Cruz, F. "Synthetic location trajectory generation using categorical diffusion models" Preprint 2024 View publication
Susmelj, A. K.; Lafci, B.; Ozdemir, F.; Davoudi, N.; Deán-Ben, X. L.; Perez-Cruz, F.; Razansky, D. "Signal domain adaptation network for limited-view optoacoustic tomography" Medical Image Analysis 91 103012 2024 View publication
Gasser, L.; Schür, C.; Perez-Cruz, F.; Schirmer, K.; Baity-Jesi, M. "Machine learning-based prediction of fish acute mortality: implementation, interpretation, and regulatory relevance" Environmental Science: Advances 3 8 1124-1138 2024 View publication
So, K. K.; Salamanca, L.; Ozdemir, F.; Perez-Cruz, F. "Data-Driven Inverse Design Method for Turbomachinery" ASME Turbo Expo 2024: Turbomachinery Technical Conference and Exposition 2024 View publication
Balmer, V.; Kuhn, S. V.; Bischof, R.; Salamanca, L.; Kaufmann, W.; Perez-Cruz, F.; Kraus, M. A. "Design Space Exploration and Explanation via Conditional Variational Autoencoders in Meta-Model-Based Conceptual Design of Pedestrian Bridges" Automation in Construction 163 105411 2024 View publication
Marks, M.; Knott, M.; Kondapaneni, N.; Cole, E.; Defraeye, T.; Perez-Cruz, F.; Perona, P. "A Closer Look at Benchmarking Self-Supervised Pre-training with Image Classification" Preprint 2024 View publication
Brandenberger, L.; Minder, J.; Salamanca, L.; Schlosser, S.; Gasser, L.; Jung, V.; Shariat, K.; Balode, M.; Schmidt-Rohr, A.; Babić, L.; et al. "DemocraSci - A Parliamentary Knowledge Graph (4 legislative periods)" Available at: https://zenodo.org/doi/10.5281/zenodo.13920293 2024 View publication
Salamanca, L.; Brandenberger, L.; Gasser, L.; Schlosser, S.; Balode, M.; Jung, V.; Perez-Cruz, F.; Schweitzer, F. "Processing Large-Scale Archival Records: The Case of the Swiss Parliamentary Records" Swiss Political Science Review 30 2 140-153 2024 View publication
Kraus, M. A.; Kuhn, S. V.; Hodel, A.; Bischof, R.; Maissen, A.; Salamanca Mino, L.; Pérez-Cruz, F. "Parametrische Modellierung und generatives tiefes Lernen für den Brückenentwurf" Bautechnik 101 3 174-180 2024 View publication
Schür, C.; Gasser, L.; Perez-Cruz, F.; Schirmer, K.; Baity-Jesi, M. "Data for: A Benchmark Dataset for Machine Learning in Ecotoxicology" Available at: https://opendata.eawag.ch/dataset/adore 2023 View publication
Hong, Y.; Xin, Y.; Dirmeier, S.; Perez-Cruz, F.; Raubal, M. "A causal intervention framework for synthesizing mobility data and evaluating predictive neural networks" Preprint 2023 View publication
Dirmeier, S.; Hong, Y.; Xin, Y.; Perez-Cruz, F. "Uncertainty quantification and out-of-distribution detection using surjective normalizing flows" Preprint 2023 View publication
Dirmeier, S.; Albert, C.; Perez-Cruz, F. "Simulation-based inference using surjective sequential neural likelihood estimation" Preprint 2023 View publication
Xydis, A.; Perraudin, N.; Rust, R.; Heutschi, K.; Casas, G.; Grognuz, O. R.; Eggenschwiler, K.; Kohler, M.; Perez-Cruz, F. "GIR dataset: A geometry and real impulse response dataset for machine learning research in acoustics" Applied Acoustics 208 109333 2023 View publication
Gasser, L.; Perez-Cruz, F.; Cockburn, M. "Can meteorological data improve the short-term prediction of individual milk yield in dairy cows?" Journal of Dairy Science 106 8 5501-5516 2023 View publication
Goshtasbpour, S.; Cohen, V.; Perez-Cruz, F.; Krause, A.; Brunskill, E.; Cho, K.; Engelhardt, B.; Sabato, S.; Scarlett, J. "Adaptive Annealed Importance Sampling with Constant Rate Progress" Proceedings of the 40th International Conference on Machine Learning 202 11642–11658 2023 View publication
Dirmeier, S.; Perez-Cruz, F. "Diffusion models for probabilistic programming" Preprint 2023 View publication
Özsoy, G.; Salamanca, L.; Connelly, M.; Hicks, R.; Pérez-Cruz, F. "KG-FRUS: a Novel Graph-based Dataset of 127 Years of US Diplomatic Relations" Preprint 2023 View publication
Salamanca, L.; Meyer, M.; Brandenberger, L.; Schlosser, S.; Campos-Schweitzer, J.; Schweitzer, F.; Perez-Cruz, F. "PDF2DATA: A Tool For Extracting Information from PDF Documents" 4th European Political Methodology Meeting (PolMeth Europe) 2023 View publication
Schür, C.; Gasser, L.; Perez Cruz, F.; Schirmer, K.; Baity-Jesi, M. "A benchmark dataset for machine learning in ecotoxicology" Scientific Data 10 2023 View publication
Harris, E.; Gasser, L.; Volpi, M.; Perez-Cruz, F.; Bjelić, S.; Obozinski, G. "Harnessing data science to improve molecular structure elucidation from tandem mass spectrometry" Structural Chemistry 34 5 1935-1950 2023 View publication
Ozdemir, F.; Lafci, B.; Dean-Ben, X. L.; Razansky, D.; Perez-Cruz, F. "OADAT: Experimental and Synthetic Clinical Optoacoustic Data for Standardized Image Processing" Transactions on Machine Learning Research 2023 View publication
Bertoli, G.; Schemm, S.; Ozdemir, F.; Perez Cruz, F.; Szekely, E. "Building a physics-constrained, fast and stable machine learning-based radiation emulator" EGU General Assembly Conference Abstracts 2023 View publication
Bertoli, G.; Ozdemir, F.; Schemm, S.; Perez-Cruz, F. "Revisiting Machine Learning Approaches for Short- and Longwave Radiation Inference in Weather and Climate Models, Part I: Offline Performance" Preprint 2023 View publication
Salamanca, L.; Apolinarska, A. A.; Pérez-Cruz, F.; Kohler, M. "Augmented Intelligence for Architectural Design with Conditional Autoencoders: Semiramis Case Study" Towards Radical Regeneration 108-121 2023 View publication
Roškar, R.; Ramakrishnan, C.; Volpi, M.; Perez-Cruz, F.; Alisafaee, M.; Fischer, P.; Gasser, L.; Harris, E. J.; Ozdemir, F.; Paitz, P.; et al. "Renku: a platform for sustainable data science" Proceedings of the 37th International Conference on Neural Information Processing Systems 42161–42173 2023 View publication
Knott, M.; Perez-Cruz, F.; Defraeye, T. "Facilitated machine learning for image-based fruit quality assessment" Journal of Food Engineering 345 111401 2023 View publication
Martinez-De La Torre, A.; Perez-Cruz, F.; Weiler, S.; Burden, A. M. "Comorbidity clusters associated with newly treated type 2 diabetes mellitus: a Bayesian nonparametric analysis" Scientific Reports 12 1 20653 2022 View publication
Zhang, M. M.; Williamson, S. A.; Pérez-Cruz, F. "Accelerated parallel non-conjugate sampling for Bayesian non-parametric models" Statistics and Computing 32 3 50 2022 View publication
Chaudhary, P.; Leitão, J. P.; Donauer, T.; D’Aronco, S.; Perraudin, N.; Obozinski, G.; Perez-Cruz, F.; Schindler, K.; Wegner, J. D.; Russo, S. "Flood Uncertainty Estimation Using Deep Ensembles" Water 14 19 2980 2022 View publication
Klimovskaia, A.; Lafci, B.; Ozdemir, F.; Davoudi, N.; Dean-Ben, X. L.; Perez-Cruz, F.; Razansky, D. "Signal Domain Learning Approach for Optoacoustic Image Reconstruction from Limited View Data" Medical Imaging with Deep Learning 2022 View publication
Pérez-Guillén, C.; Techel, F.; Hendrick, M.; Volpi, M.; van Herwijnen, A.; Olevski, T.; Obozinski, G.; Pérez-Cruz, F.; Schweizer, J. "Weather, snowpack and danger ratings data for automated avalanche danger level predictions" Available at: https://www.doi.org/10.16904/envidat.330 2022 View publication
Ozdemir, F.; Lafci, B.; Dean-Ben, X. L.; Razansky, D.; Perez-Cruz, F. "OADAT: Experimental and Synthetic Clinical Optoacoustic Data for Standardized Image Processing" Available at: http://hdl.handle.net/20.500.11850/551512 2022 View publication
Pérez-Guillén, C.; Techel, F.; Hendrick, M.; Volpi, M.; van Herwijnen, A.; Olevski, T.; Obozinski, G.; Pérez-Cruz, F.; Schweizer, J. "Data-driven automated predictions of the avalanche danger level for dry-snow conditions in Switzerland" Natural Hazards and Earth System Sciences 22 2031–2056 2022 View publication
Albert, C.; Ulzega, S.; Ozdemir, F.; Perez-Cruz, F.; Mira, A. "Learning Summary Statistics for Bayesian Inference with Autoencoders" SciPost Physics Core 5 3 43 2022 View publication
Stalder, S.; Perraudin, N.; Achanta, R.; Perez-Cruz, F.; Volpi, M. "What You See is What You Classify: Black Box Attributions" Neural Information Processing Systems (NeurIPS) 2022 View publication
Li, S.; Zacharias, M.; Snuverink, J.; Coello De Portugal, J.; Perez-Cruz, F.; Reggiani, D.; Adelmann, A. "A Novel Approach for Classification and Forecasting of Time Series in Particle Accelerators" Information 12 3 121 2021 View publication
Rust, R.; Xydis, A.; Heutschi, K.; Perraudin, N.; Casas, G.; Du, C.; Strauss, J.; Eggenschwiler, K.; Perez-Cruz, F.; Gramazio, F.; et al. "A data acquisition setup for data driven acoustic design" Building Acoustics 28 4 345-360 2021 View publication
Landwehr, S.; Volpi, M.; Haumann, F. A.; Robinson, C. M.; Thurnherr, I.; Ferracci, V.; Baccarini, A.; Thomas, J.; Gorodetskaya, I.; Tatzelt, C.; et al. "Exploring the coupled ocean and atmosphere system with a data science approach applied to observations from the Antarctic Circumnavigation Expedition" Earth System Dynamics 12 4 1295-1369 2021 View publication
Pérez-Guillén, C.; Hendrick, M.; Techel, F.; van Herwijnen, A.; Volpi, M.; Olevski, T.; Pérez-Cruz, F.; Obozinski, G.; Schweizer, J. "Data-driven automatic predictions of avalanche danger in Switzerland" EGU General Assembly Conference Abstracts EGU21–6154 2021 View publication
Safin, A.; Bouffard, D.; Runnalls, J.; Georgatos, F.; Bouillet, E.; Ozdemir, F.; Perez Cruz, F.; Šukys, J. "Data assimilation in lake Geneva using the SPUX framework" EGU General Assembly Conference Abstracts 19564 2020 View publication
Landwehr, S.; Volpi, M.; Perez-Cruz, F.; Schmale, J. "Sparse Principal Component Analysis as a tool for the exploration of heterogeneous datasets from multidisciplinary field experiments" Data Science in Climate and Climate Impact Research 2020 View publication
Dejea, H.; Tanner, C.; Achanta, R.; Stampanoni, M.; Perez-Cruz, F.; Konukoglu, E.; Bonnin, A. "Synchrotron X-Ray Phase Contrast Imaging and Deep Neural Networks for Cardiac Collagen Quantification in Hypertensive Rat Model" Functional Imaging and Modeling of the Heart 11504 187-195 2019 View publication
Perez-Cruz, F.; Olmos, P. M.; Zhang, M. M.; Huang, H. "Probabilistic Time of Arrival Localization" IEEE Signal Processing Letters 26 11 1683-1687 2019 View publication
Pradier, M. F.; Reis, B.; Jukofsky, L.; Milletti, F.; Ohtomo, T.; Perez-Cruz, F.; Puig, O. "Case-control Indian buffet process identifies biomarkers of response to Codrituzumab" BMC Cancer 19 1 278 2019 View publication
Deng, R. H.; Gauthier-Umaña, V.; Ochoa, M.; Yung, M.; Hitaj, B.; Gasti, P.; Ateniese, G.; Perez-Cruz, F. "PassGAN: A Deep Learning Approach for Password Guessing" 11464 217-237 2019 View publication
Mueller, M.; Jaehn, M.; Pentina, A.; Brunner, D.; Perez-Cruz, F.; Hueglin, C.; Emmenegger, L. "Carbosense - CO2 sensor network and simulations" 1st Swiss Workshop on Machine Learning for Environmental and Geosciences (MLEG) 2019 View publication
Martin, H.; Bucher, D.; Suel, E.; Zhao, P.; Perez-Cruz, F.; Raubal, M. "Graph Convolutional Neural Networks for Human Activity Purpose Imputation" NIPS 2018 Spatiotemporal Workshop 2018 View publication
Brunner, D.; Mueller, M.; Jaehn, M.; Graf, P.; Meyer, J.; Hueglin, C.; Pentina, A.; Perez Cruz, F.; Emmenegger, L. "A low-cost sensor network to monitor the CO2 emissions of the city of Zurich" The 3rd ICOS Science Conference on Greenhouse Gases and Biogeochemical Cycles 2018 View publication
Ruiz, F. J. R.; Valera, I.; Svensson, L.; Perez-Cruz, F. "Infinite Factorial Finite State Machine for Blind Multiuser Channel Estimation" IEEE Transactions on Cognitive Communications and Networking 4 2 177-191 2018 View publication
Utkovski, Z.; Pradier, M. F.; Stojkoski, V.; Perez-Cruz, F.; Kocarev, L.; Hernandez Montoya, A. R. "Economic complexity unfolded: Interpretable model for the productive structure of economies" PLOS ONE 13 8 e0200822 2018 View publication
Boloix-Tortosa, R.; Murillo-Fuentes, J. J.; Payan-Somet, F. J.; Perez-Cruz, F. "Complex Gaussian Processes for Regression" IEEE Transactions on Neural Networks and Learning Systems 29 11 5499-5511 2018 View publication
Cespedes, J.; Olmos, P. M.; Sanchez-Fernandez, M.; Perez-Cruz, F. "Probabilistic MIMO Symbol Detection With Expectation Consistency Approximate Inference" IEEE Transactions on Vehicular Technology 67 4 3481-3494 2018 View publication
Hitaj, B.; Gasti, P.; Ateniese, G.; Perez-Cruz, F. "PassGAN: A Deep Learning Approach for Password Guessing" Preprint 2017 View publication

Mentioned in

May 1, 2024

Smartair | An active learning algorithm for real-time acquisition and regression of flow field data

Smartair | An active learning algorithm for real-time acquisition and regression of flow field data

We’ve developed a smart solution for wind tunnel testing that learns as it works, providing accurate results faster. It provides an accurate mean flow field and turbulence field reconstruction while shortening the sampling time.
February 6, 2024

PassGPT | Using language models to enhance password security

PassGPT | Using language models to enhance password security

PassGPT is a Large Language Model for password generation trained on leaked passwords, which can outperform existing methods based on generative adversarial networks by guessing twice as many unseen passwords.
October 25, 2023

Computerworld | AI predicts avalanche danger [In German]

Computerworld | AI predicts avalanche danger [In German]

The AI project "DEAPSnow" takes avalanche forecasting to a whole new level.
February 28, 2023

DLBIRHOUI | Deep Learning Based Image Reconstruction for Hybrid Optoacoustic and Ultrasound Imaging

DLBIRHOUI | Deep Learning Based Image Reconstruction for Hybrid Optoacoustic and Ultrasound Imaging

Optoacoustic imaging is a new, real-time feedback and non-invasive imaging tool with increasing application in clinical and pre-clinical settings. The DLBIRHOUI project tackles some of the major challenges in optoacoustic imaging to facilitate faster adoption of this technology for clinical use.
September 23, 2022

What you see is what you classify: black box attributions

What you see is what you classify: black box attributions

The lack of transparency of black-box models is a fundamental problem in modern Artificial Intelligence and Machine Learning. This work focuses on how to unbox deep learning models for image classification problems.
July 9, 2020

CarboSense4D | Modelling CO2 concentration across Switzerland

CarboSense4D | Modelling CO2 concentration across Switzerland

The goal of CarboSense4D is to produce an accurate map of the evolution of carbon dioxide over Switzerland by applying machine learning methods from a network of low-cost sensors.
November 7, 2019

Improving species biodiversity analyses and citizen science feedback through machine learning

Improving species biodiversity analyses and citizen science feedback through machine learning

The WSL and the SDSC are actively working towards the development and the study of the benefits of machine learning approaches for facilitating biodiversity assessments.

Case Studies

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